HerbalEGram: Volume 9, Number 2, February 2012
Multi-Center Consortiums Seek to Create Better Plant Medicines Two multi-institutional consortiums funded by the US National Institutes of
Health (NIH) have mapped the genes of dozens of medicinal plants in order to
study how they create complex therapeutic compounds. Using this genetic data,
the researchers plan to engineer plants to produce more of a specific naturally
occurring medicinal chemical, or slight variations of these phytochemicals,
hopefully resulting in new and better medicines.1
The Medicinal Plant Consortium (MPC) and the Medicinal Plant/Human Health
Consortium (MP/HHC)—2 separate but similar projects—are funded by grants
totaling about $9 million, awarded by the National Institute of General Medical
Sciences at NIH and made possible by the American Recovery and Reinvestment
Act.1,2 The MPC team is led by the University of Kentucky (UK) and
also includes Iowa State University, Michigan State University, the University
of Mississippi, Purdue University, Texas A&M University, and the John Innes
Centre in Norwich, England. The MP/HHC is led by Washington State University
(WSU), and has partnered with the Dorothy Bradley Atkins Medicinal Plants
Garden of the University of Illinois at Chicago (UIC), Donald Danforth Plant
Science Center in St. Louis, and National Center for Genome Resources in Santa
Fe, New Mexico.2
MPC leader and UK plant science professor Joe Chappell, PhD, said the MPC’s
work would not have been possible without the people at each of the
participating institutions who had a particular interest in one or more of the
target plants. “This is what made our efforts so rich. We had expertise for
each of the identified plants, propagating the plant, and knowing a lot about
where and how to look for interesting compounds in the plants” (e-mail, January
5-10, 2012).
Both consortiums started their work in 2009 and began by obtaining physical
specimens. Norman G. Lewis, PhD, leader of the MP/HHC and Regents Professor and
Director at WSU, emphasized that their team of experts in medicinal plant
biochemical pathways carefully selected species with the most complex chemical
structures, as well as those widely used in medicine today. “Many of the plants
being studied are not only medicinally useful, but their molecules are
structurally complex and it is therefore very expensive and difficult to
synthesize them,” said Dr. Lewis (oral communication, January 17, 2012). Because
many of the plants are over-harvested and even endangered in their native
lands, the consortiums hope to engineer alternative plants and plants in cell
culture in order to reduce the threat of species extinction.
Herbs analyzed by the consortiums include ginseng (Panax spp.), andrographis (Andrographis
paniculata), marijuana (Cannabis
sativa), hoodia (Hoodia gordonii),
ginkgo (Ginkgo biloba), foxglove (Digitalis purpurea)—the source of the
widely used heart drug digoxin—and periwinkle (Catharanthus roseus), which is used to make medicines that treat several cancers, childhood leukemia,
and Hodgkin’s disease. Dr. Lewis pointed out that the medicinal plants chosen include
those extensively used in pain management, such as morphine from the opium
poppy (Papaver somniferum); cancer
treatment, such as Taxus
species harboring the anti-cancer compound paclitaxel (Taxol®),
podophyllotoxin from Himalayan mayapple (Podophyllum
hexandrum), and camptothecin from
Camptotheca
acuminata; and others in consideration for
disorders such as for Alzheimer’s disease and new cancer treatments.
Using almost any plant tissue, the consortium researchers were able to sequence
the genes expressed throughout each plant, resulting in sets of data called transcriptomes.
A transcriptome is not an entire genome, but a small subset of genome DNA comprised
of “all the genes that are important for creating the individual plants,” said
Dr. Chappell. Researchers can use the transcriptomes to look for the genes that
are “switched on” and “sending messages” throughout the plant—which indicates
that an important substance or process is being activated—and then reassemble
these “candidate” genes using algorithms, said Dr. Lewis.
For example, scientists know that valerian (Valeriana
officinalis) produces several different kinds of chemicals, but have not determined
which is responsible for the plant’s sedative effects. According to Dr.
Chappell, MPC’s work has generated information that will help them identify
valerian plant lines or tissues where one or more of these compounds might
accumulate. These genetic maps provide insight into how plants biosynthesize—or
assemble—molecules to make complex and medicinal compounds. The researchers
will also be able to produce the compounds and derivatives in alternative
organisms.
“We should be able to create a yeast line that produces one of the active
ingredients of the Valeriana plant,”
said Dr. Chappell. “I know this sounds crazy, but it’s terribly exciting—if we
can isolate one active ingredient, then we can probably make a few changes to
the compound and possibly make it a more effective medicinal. We are trying to
glean the secrets plants learned [throughout evolution] that has allowed them
to make fantastic chemicals, chemicals that gave plants the adaptive advantages
to live in all kinds of habitats on planet earth, and chemicals that man has
learned to use for our own purposes (food, medicines, etc).”
Scientists could also potentially create
better medicines by modifying the medicinal compounds. “Very often,” said Dr.
Lewis, “plants make a chemical structure or scaffold that can be modified
chemically upon and improved. Once you change or modify a compound with parts
of other molecules it can affect the mode of action, and take it away from
being, for example, very toxic or not very effective to being a blockbuster
drug.”
The MPC made its transcriptomes available online in December of 2011, and
MP/HHC has made most of the transcriptomes available, though it is waiting to
obtain a couple of rare plants from places like Indonesia. Dr. Chappell said
researchers and industry members around the globe are already taking advantage
of the information. “You may know that the nutraceuticals industry wants to
have higher standards for their products. So the manufacturers of supplements
are using our information to develop better quality control standards for their
products. One example of this technology is DNA barcodes, little technology
tags that can be used by the manufactures to document what plant species are
actually in their product and to inform the customer if any other plant
materials (i.e., contaminants) might also be in the product.”
The consortiums’ members are now working on mapping the plants’ metabolomes and
publishing them online. Metabolomes are “like a fingerprint of all the
molecules that are in the plant,” said Dr. Lewis. Though previous work has been
done in this area, Dr. Lewis noted that the progress has been limited due to
the years of dedicated research it takes to identify each step in a biochemical
pathway. According to UIC’s webpage for the MP/HHC, “The current understanding
of the formation of plant-derived medicinal compounds at the enzyme, gene, and
regulatory levels is very incomplete. Not a single complex plant medicinal
pathway has yet to be completely elucidated at both the enzyme and the
regulatory level.”3
“But with this consortium work,” said Dr. Lewis, “one has the expectation that
one can identify the genes much faster. We’ve basically opened up a treasure
trove of information.”
More information on MPC is available at http://medicinalplantgenomics.msu.edu
and http://metnetdb.org/mpmr_public/. More information on MP/HHC is available
at www.uic.edu/pharmacy/MedPlTranscriptome.
—Lindsay Stafford
References
1. New light on medicinal benefits of plants. Science Daily. December 15, 2011.
Available at: www.sciencedaily.com/releases/2011/12/111215095243.htm. Accessed
January 9, 2012.
2. Welcome to our website. Transcriptome Characterization, Sequencing, And Assembly
Of Medicinal Plants Relevant To Human Health website. Available at:
www.uic.edu/pharmacy/MedPlTranscriptome/#. Accessed January 9, 2012.
3. Soejarto S. Why the transcriptome project? Transcriptome Characterization,
Sequencing, And Assembly Of Medicinal Plants Relevant To Human Health website.
June 18, 2011. Available at:
www.uic.edu/pharmacy/MedPlTranscriptome/about.html. Accessed January 9, 2012.
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